Status
(Sep 2015) The Zygoascus hellenicus Y-7136 genome was sequenced using Illumina and assembled with AllPathsLG version R49403 (Gnerre et al. 2010).
Summary statistics for the Zygoascus hellenicus Y-7136
v1.0 release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 12.17 |
Sequencing read coverage depth | 98.4x |
# of contigs | 48 |
# of scaffolds | 11 |
# of scaffolds >= 2Kbp | 8 |
Scaffold N50 | 2 |
Scaffold L50 (Mbp) | 3.55 |
# of gaps | 37 |
% of scaffold length in gaps | 0.4% |
Three largest Scaffolds (Mbp) | 3.77, 3.55, 2.17 |
ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
EstClusters | CombestEstClusters | 16726 | 16726 | 100.0% |
Gene Models | FilteredModels1 | |
length (bp) of: | average | median |
gene | 1522 | 1317 |
transcript | 1464 | 1266 |
exon | 1001 | 826 |
intron | 128 | 75 |
description: | ||
protein length (aa) | 454 | 382 |
exons per gene | 1.46 | 1 |
# of gene models | 5430 |
Collaborators
Joey Spatafora, Oregon State University
Jon Magnuson, Pacific Northwest National Laboratory
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.