Info • Varicosporina prolifera CBS 130722 v1.0

Status

[August 2024] The Varicosporina prolifera CBS 130722 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 52.83
Sequencing read coverage depth 169.97x
# of contigs 22
# of scaffolds 22
# of scaffolds >= 2Kbp 22
Scaffold N50 4
Scaffold L50 (Mbp) 6.24
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 8.05, 7.10, 7.04


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 43225 40945 94.7%
Ests est.fasta 231424399 229539448 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1947 1652
transcript 1730 1453
exon 598 366
intron 117 80
description:
protein length (aa) 483 385
exons per gene 2.89 2
# of gene models 9676


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Doval RL, Müller A, Brown DW, Johnson D, Quandt CA, Barry K, Clum A, Hundley H, LaButti K, Lipzen A, Mondo SJ, Ohm RA, Pangilinan JL, Riley RW, Steindorff AS, Wang M, Drula E, Henrissat B, Bushley K, Spatafora JW, Peng M, Grigoriev IV, de Vries RP
A Comparison of the Biotechnological Potential of Marine and Terrestrial Species of Two Orders of Sordariomycete Fungi.
Mar Biotechnol (NY). 2025 Jun 25;27(4):103. doi: 10.1007/s10126-025-10484-3

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.