Status
Summary statistics for the Trichoderma harzianum TR274
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 40.87 |
| Sequencing read coverage depth | 100x |
| # of contigs | 2282 |
| # of scaffolds | 2282 |
| # of scaffolds >= 2Kbp | 1992 |
| Scaffold N50 | 331 |
| Scaffold L50 (Mbp) | 0.04 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.18, 0.16, 0.16 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | Trinity_assembled_Illumina_ESTs | 13236 | 12962 | 97.9% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1584 | 1309 |
| transcript | 1418 | 1164 |
| exon | 507 | 298 |
| intron | 94 | 68 |
| description: | ||
| protein length (aa) | 443 | 356 |
| exons per gene | 2.80 | 2 |
| # of gene models | 13932 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Kubicek CP, Steindorff AS, Chenthamara K, Manganiello G, Henrissat B, Zhang J, Cai F, Kopchinskiy AG, Kubicek EM, Kuo A, Baroncelli R, Sarrocco S, Noronha EF, Vannacci G, Shen Q, Grigoriev IV, Druzhinina IS
Evolution and comparative genomics of the most common Trichoderma species.
BMC Genomics. 2019 Jun 12;20(1):485. doi: 10.1186/s12864-019-5680-7
Steindorff AS, Ramada MH, Coelho AS, Miller RN, Pappas GJ Jr, Ulhoa CJ, Noronha EF
Identification of mycoparasitism-related genes against the phytopathogen Sclerotinia sclerotiorum through transcriptome and expression profile analysis in Trichoderma harzianum.
BMC Genomics. 2014 Mar 18;15():204. doi: 10.1186/1471-2164-15-204
Kubicek CP, Steindorff AS, Chenthamara K, Manganiello G, Henrissat B, Zhang J, Cai F, Kopchinskiy AG, Kubicek EM, Kuo A, Baroncelli R, Sarrocco S, Noronha EF, Vannacci G, Shen Q, Grigoriev IV, Druzhinina IS
Evolution and comparative genomics of the most common Trichoderma species.
BMC Genomics. 2019 Jun 12;20(1):485. doi: 10.1186/s12864-019-5680-7
Steindorff AS, Ramada MH, Coelho AS, Miller RN, Pappas GJ Jr, Ulhoa CJ, Noronha EF
Identification of mycoparasitism-related genes against the phytopathogen Sclerotinia sclerotiorum through transcriptome and expression profile analysis in Trichoderma harzianum.
BMC Genomics. 2014 Mar 18;15():204. doi: 10.1186/1471-2164-15-204
Funding
This project was not sequenced at the JGI.
