Status
The genome sequence and gene models of Trichoderma hamatum GD12 were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Dec 4, 2018 and annotation provided by the authors. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Trichoderma hamatum GD12 v1.0
release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 38.43 |
Sequencing read coverage depth | 40x |
# of contigs | 820 |
# of scaffolds | 745 |
# of scaffolds >= 2Kbp | 637 |
Scaffold N50 | 64 |
Scaffold L50 (Mbp) | 0.18 |
# of gaps | 75 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 0.68, 0.59, 0.58 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 1727 | 1435 |
transcript | 1550 | 1275 |
exon | 557 | 306 |
intron | 101 | 69 |
description: | ||
protein length (aa) | 516 | 424 |
exons per gene | 2.78 | 2 |
# of gene models | 10520 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Studholme DJ, Harris B, Le Cocq K, Winsbury R, Perera V, Ryder L, Ward JL, Beale MH, Thornton CR, Grant M
Investigating the beneficial traits of Trichoderma hamatum GD12 for sustainable agriculture-insights from genomics.
Front Plant Sci. 2013;4():258. doi: 10.3389/fpls.2013.00258
Studholme DJ, Harris B, Le Cocq K, Winsbury R, Perera V, Ryder L, Ward JL, Beale MH, Thornton CR, Grant M
Investigating the beneficial traits of Trichoderma hamatum GD12 for sustainable agriculture-insights from genomics.
Front Plant Sci. 2013;4():258. doi: 10.3389/fpls.2013.00258
Funding
This project was not sequenced at the JGI.