Info • Trachipleistophora hominis

Status

The genome sequence and gene models of Trachipleistophora hominis were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.


Genome Assembly
Genome Assembly size (Mbp) 8.50
Sequencing read coverage depth
# of contigs 1596
# of scaffolds 310
# of scaffolds >= 2Kbp 301
Scaffold N50 46
Scaffold L50 (Mbp) 0.05
# of gaps 1286
% of scaffold length in gaps 9.3%
Three largest Scaffolds (Mbp) 0.31, 0.22, 0.22


Gene Models ExternalModels
length (bp) of: average median
gene 875 645
transcript 875 645
exon 875 645
intron n/a 0
description:
protein length (aa) 292 215
exons per gene 1.00 1
# of gene models 3212


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Heinz E, Williams TA, Nakjang S, Noël CJ, Swan DC, Goldberg AV, Harris SR, Weinmaier T, Markert S, Becher D, Bernhardt J, Dagan T, Hacker C, Lucocq JM, Schweder T, Rattei T, Hall N, Hirt RP, Embley TM
The genome of the obligate intracellular parasite Trachipleistophora hominis: new insights into microsporidian genome dynamics and reductive evolution.
PLoS Pathog. 2012;8(10):e1002979. doi: 10.1371/journal.ppat.1002979

Watson AK, Williams TA, Williams BA, Moore KA, Hirt RP, Embley TM
Transcriptomic profiling of host-parasite interactions in the microsporidian Trachipleistophora hominis.
BMC Genomics. 2015 Nov 21;16():983. doi: 10.1186/s12864-015-1989-z

Links

Funding

This project was not sequenced at the JGI.