Status
v1.0 (November 2008): The Thielavia terrestris NRRL 8126 genome sequence assembly v1.0 was built with Arachne assembler from whole genome shotgun and paired end sequencing reads. The nuclear genome sequence annotation from this draft assembly is from the JGI Genome Annotation Pipeline and custom analyses.
Summary statistics for the Thielavia terrestris NRRL 8126 v1.0 release:
| Nuclear Genome Assembly | v1.0 |
| Nuclear genome size(Mbp) | 36.9 |
| Sequencing read coverage depth | 10.15x |
| # of contigs | 231 |
| # of scaffolds | 8 |
| # of nuclear scaffolds >50 Kbp | 8 |
| Nuclear scaffold N/L50 | 3/4.6 MB |
| Configs N/L50 | 44/281.2 KB |
| % genome in scaffolds >50 Kbp | 100 % |
| % genome in gaps | 0.4 % |
| % genome in repeats | 3.4% |
| Gene Models | v1.01 |
| # of gene models | 9815 |
| length (bp) of | average |
| gene | 1,823 |
| transcript | 1,549 |
| exon | 508 |
| intron | 136 |
| description | |
| protein length(aa) | 466 |
| exons per gene | 3.1 |
| % gene models with | |
| nr homology support EST support PFAM domains |
91% 47% 48% |
1 FilteredModels2 gene model set
| ESTs | Data set | # sequences | # mapped to genome | % mapped to genome | Notes |
| EST clusters | Thite1_EstClusters.fasta | 11,186 | 8,467 | 76% | Consensus sequences, one per cluster, for Thite1_Ests |
| ESTs | Thite1_Ests.fasta | 33,539 | 29,485 | 88% | Rich-medium ESTs for T. terrestris, sequenced at JGI |
Collaborators
- Randy Berka , Novozymes, Inc.
- Paul Harris , Novozymes, Inc.
- Scott Baker , Pacific Northwest National Laboratory
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Berka RM, Grigoriev IV, Otillar R, Salamov A, Grimwood J, Reid I, Ishmael N, John T, Darmond C, Moisan MC, Henrissat B, Coutinho PM, Lombard V, Natvig DO, Lindquist E, Schmutz J, Lucas S, Harris P, Powlowski J, Bellemare A, Taylor D, Butler G, de Vries RP, Allijn IE, van den Brink J, Ushinsky S, Storms R, Powell AJ, Paulsen IT, Elbourne LD, Baker SE, Magnuson J, Laboissiere S, Clutterbuck AJ, Martinez D, Wogulis M, de Leon AL, Rey MW, Tsang A
Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris.
Nat Biotechnol. 2011 Oct 2;29(10):922-7. doi: 10.1038/nbt.1976
Berka RM, Grigoriev IV, Otillar R, Salamov A, Grimwood J, Reid I, Ishmael N, John T, Darmond C, Moisan MC, Henrissat B, Coutinho PM, Lombard V, Natvig DO, Lindquist E, Schmutz J, Lucas S, Harris P, Powlowski J, Bellemare A, Taylor D, Butler G, de Vries RP, Allijn IE, van den Brink J, Ushinsky S, Storms R, Powell AJ, Paulsen IT, Elbourne LD, Baker SE, Magnuson J, Laboissiere S, Clutterbuck AJ, Martinez D, Wogulis M, de Leon AL, Rey MW, Tsang A
Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris.
Nat Biotechnol. 2011 Oct 2;29(10):922-7. doi: 10.1038/nbt.1976
Funding
This work was performed under the auspices of the US Department of
Energy's Office of Science, Biological and Environmental Research
Program, and by the University of California, Lawrence Berkeley
National Laboratory under contract No. DE-AC02-05CH11231, Lawrence
Livermore National Laboratory under Contract No. DE-AC52-07NA27344,
and Los Alamos National Laboratory under contract No.
DE-AC02-06NA25396.
