Status
The Tetraselmis striata genome sequence and gene models have not been determined by the JGI, but were downloaded from the Los Alamos National Laboratory (LANL) Greenhouse portal on October 31, 2019. Please note that this copy of the genome is not maintained by LANL and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to automatically annotate predicted proteins.
Summary statistics for the Tetraselmis striata release are
below.
Genome Assembly | |
Genome Assembly size (Mbp) | 232.09 |
Sequencing read coverage depth | |
# of contigs | 3602 |
# of scaffolds | 3602 |
# of scaffolds >= 2Kbp | 3512 |
Scaffold N50 | 516 |
Scaffold L50 (Mbp) | 0.13 |
# of gaps | 0 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 4.14, 0.73, 0.68 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 2650 | 1614 |
transcript | 1263 | 915 |
exon | 260 | 152 |
intron | 362 | 191 |
description: | ||
protein length (aa) | 421 | 305 |
exons per gene | 4.85 | 3 |
# of gene models | 46696 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Steadman Tyler CR, Hovde BT, Daligault HE, Zhang XL, Kunde Y, Marrone BL, Twary SN, Starkenburg SR
High-Quality Draft Genome Sequence of the Green Alga Tetraselmis striata (Chlorophyta) Generated from PacBio Sequencing.
Microbiol Resour Announc. 2019 Oct 24;8(43):. doi: 10.1128/MRA.00780-19
Steadman Tyler CR, Hovde BT, Daligault HE, Zhang XL, Kunde Y, Marrone BL, Twary SN, Starkenburg SR
High-Quality Draft Genome Sequence of the Green Alga Tetraselmis striata (Chlorophyta) Generated from PacBio Sequencing.
Microbiol Resour Announc. 2019 Oct 24;8(43):. doi: 10.1128/MRA.00780-19
Links
- JGI Algae EcoGroup Portal
- JGI PhyloGroup Portals: Archaeplastida Viridiplantae Chlorophyta Chlorodendrophyceae
Funding
This project was not sequenced at the JGI.