Status
Talaromyces borbonicus CBS 141340 was sequenced by University of Naples “Federico II” using Illumina HiSeq2500, and annotated with software Glimmer v3.02 and CodingQuarry which integrated mRNA-Seq evidence to improve gene prediction.
Summary statistics for the Talaromyces borboniensis CBS
141340 v1.0 release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 27.05 |
Sequencing read coverage depth | |
# of contigs | 121 |
# of scaffolds | 28 |
# of scaffolds >= 2Kbp | 23 |
Scaffold N50 | 5 |
Scaffold L50 (Mbp) | 2.20 |
# of gaps | 93 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 3.30, 3.17, 2.69 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 1700 | 1418 |
transcript | 1481 | 1239 |
exon | 525 | 291 |
intron | 122 | 71 |
description: | ||
protein length (aa) | 494 | 413 |
exons per gene | 2.82 | 2 |
# of gene models | 9744 |
Collaborators
Vincenza Faraco, Simona Varriale, Gabriella Cerullo, Department of Chemical sciences, University of Naples Federico II
Olimpia Pepe, Valeria Ventorino, Department of Agriculture, University of Naples Federico II
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Varriale S, Houbraken J, Granchi Z, Pepe O, Cerullo G, Ventorino V, Chin-A-Woeng T, Meijer M, Riley R, Grigoriev IV, Henrissat B, de Vries RP, Faraco V
Talaromyces borbonicus, sp. nov., a novel fungus from biodegraded Arundo donax with potential abilities in lignocellulose conversion.
Mycologia. 2018 Mar-Apr;110(2):316-324. doi: 10.1080/00275514.2018.1456835
Varriale S, Houbraken J, Granchi Z, Pepe O, Cerullo G, Ventorino V, Chin-A-Woeng T, Meijer M, Riley R, Grigoriev IV, Henrissat B, de Vries RP, Faraco V
Talaromyces borbonicus, sp. nov., a novel fungus from biodegraded Arundo donax with potential abilities in lignocellulose conversion.
Mycologia. 2018 Mar-Apr;110(2):316-324. doi: 10.1080/00275514.2018.1456835
Funding
This project was not sequenced at the JGI.