Status
This genome was sequenced by the Broad Institute. Please check their data use policies.
Summary statistics for the Schizosaccharomyces japonicus
yFS275 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 11.73 |
| Sequencing read coverage depth | 9x |
| # of contigs | 87 |
| # of scaffolds | 32 |
| # of scaffolds >= 2Kbp | 32 |
| Scaffold N50 | 2 |
| Scaffold L50 (Mbp) | 3.87 |
| # of gaps | 55 |
| % of scaffold length in gaps | 5.1% |
| Three largest Scaffolds (Mbp) | 4.29, 3.87, 3.04 |
| Gene Models | BroadModels | |
| length (bp) of: | average | median |
| gene | 2061 | 1785 |
| transcript | 1976 | 1691 |
| exon | 939 | 464 |
| intron | 79 | 58 |
| description: | ||
| protein length (aa) | 468 | 382 |
| exons per gene | 2.10 | 2 |
| # of gene models | 4878 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Rhind N, Chen Z, Yassour M, Thompson DA, Haas BJ, Habib N, Wapinski I, Roy S, Lin MF, Heiman DI, Young SK, Furuya K, Guo Y, Pidoux A, Chen HM, Robbertse B, Goldberg JM, Aoki K, Bayne EH, Berlin AM, Desjardins CA, Dobbs E, Dukaj L, Fan L, FitzGerald MG, French C, Gujja S, Hansen K, Keifenheim D, Levin JZ, Mosher RA, Müller CA, Pfiffner J, Priest M, Russ C, Smialowska A, Swoboda P, Sykes SM, Vaughn M, Vengrova S, Yoder R, Zeng Q, Allshire R, Baulcombe D, Birren BW, Brown W, Ekwall K, Kellis M, Leatherwood J, Levin H, Margalit H, Martienssen R, Nieduszynski CA, Spatafora JW, Friedman N, Dalgaard JZ, Baumann P, Niki H, Regev A, Nusbaum C
Comparative functional genomics of the fission yeasts.
Science. 2011 May 20;332(6032):930-6. doi: 10.1126/science.1203357
Rhind N, Chen Z, Yassour M, Thompson DA, Haas BJ, Habib N, Wapinski I, Roy S, Lin MF, Heiman DI, Young SK, Furuya K, Guo Y, Pidoux A, Chen HM, Robbertse B, Goldberg JM, Aoki K, Bayne EH, Berlin AM, Desjardins CA, Dobbs E, Dukaj L, Fan L, FitzGerald MG, French C, Gujja S, Hansen K, Keifenheim D, Levin JZ, Mosher RA, Müller CA, Pfiffner J, Priest M, Russ C, Smialowska A, Swoboda P, Sykes SM, Vaughn M, Vengrova S, Yoder R, Zeng Q, Allshire R, Baulcombe D, Birren BW, Brown W, Ekwall K, Kellis M, Leatherwood J, Levin H, Margalit H, Martienssen R, Nieduszynski CA, Spatafora JW, Friedman N, Dalgaard JZ, Baumann P, Niki H, Regev A, Nusbaum C
Comparative functional genomics of the fission yeasts.
Science. 2011 May 20;332(6032):930-6. doi: 10.1126/science.1203357
Funding
This project was not sequenced at the JGI.
