Info • Parmales sp. scaly parma v1.0

Status

The Parmales sp. scaly parma genome sequence and gene models have not been determined by the JGI, but were downloaded from NCBI on November 04, 2024. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds and 5) unsupported short models. This resulted in the removal of 601 models and the generation of the FilteredModels1 (GeneCatalog) gene track. All published models are available in the ExternalModels track. Please note that this copy of the genome is not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.

Genome Assembly
Genome Assembly size (Mbp) 30.98
Sequencing read coverage depth NA
# of contigs 2892
# of scaffolds 1921
# of scaffolds >= 2Kbp 1060
Scaffold N50 182
Scaffold L50 (Mbp) 0.05
# of gaps 971
% of scaffold length in gaps 0.5%
Three largest Scaffolds (Mbp) 0.20, 0.19, 0.18


Gene Models FilteredModels1
length (bp) of: average median
gene 1968 1409
transcript 1658 1230
exon 553 433
intron 156 117
description:
protein length (aa) 553 410
exons per gene 3.00 2
# of gene models 11651


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.