Status
The genome sequence and gene prediction of Saccharomyces cerevisiae strain S288C have not been determined by the JGI, but were downloaded from the Saccharomyces Genome Database (SGD, www.yeastgenomes.org) on November 30th 2010. Please note that this copy of the genome is not maintained by SGD and is therefore not automatically updated. This copy of the genome does not include the mitochondrial and 2-micron plasmid DNA. JGI tools were used to automatically annotate predicted proteins.
Summary statistics for the Saccharomyces cerevisiae S288C
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 12.07 |
| Sequencing read coverage depth | ? |
| # of contigs | 16 |
| # of scaffolds | 16 |
| # of scaffolds >= 2Kbp | 16 |
| Scaffold N50 | 6 |
| Scaffold L50 (Mbp) | 0.92 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.53, 1.09, 1.09 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | ESTs | 2933 | 2850 | 97.2% |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1341 | 1071 |
| transcript | 1329 | 1062 |
| exon | 1274 | 1017 |
| intron | 235 | 141 |
| description: | ||
| protein length (aa) | 443 | 354 |
| exons per gene | 1.04 | 1 |
| # of gene models | 6575 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Goffeau A, Barrell BG, Bussey H, Davis RW, Dujon B, Feldmann H, Galibert F, Hoheisel JD, Jacq C, Johnston M, Louis EJ, Mewes HW, Murakami Y, Philippsen P, Tettelin H, Oliver SG
Life with 6000 genes.
Science. 1996 Oct 25;274(5287):546, 563-7. doi: 10.1126/science.274.5287.546
Goffeau A, Barrell BG, Bussey H, Davis RW, Dujon B, Feldmann H, Galibert F, Hoheisel JD, Jacq C, Johnston M, Louis EJ, Mewes HW, Murakami Y, Philippsen P, Tettelin H, Oliver SG
Life with 6000 genes.
Science. 1996 Oct 25;274(5287):546, 563-7. doi: 10.1126/science.274.5287.546
Funding
This project was not sequenced at the JGI.
