Status
[May 2015] The Rutstroemia firma genome was sequenced
using the Illumina platform and assembled with AllPathsLG release
version R49403 (Gnerre
et al., 2011).
Mitochondrial genome was assembled separately and is available in
the downloads section.
Summary statistics for the Rutstroemia firma CBS 115.86
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 44.27 |
| Sequencing read coverage depth | 81.9x |
| # of contigs | 367 |
| # of scaffolds | 48 |
| # of scaffolds >= 2Kbp | 36 |
| Scaffold N50 | 7 |
| Scaffold L50 (Mbp) | 2.94 |
| # of gaps | 319 |
| % of scaffold length in gaps | 0.5% |
| Three largest Scaffolds (Mbp) | 4.88, 4.09, 3.38 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | RNNotator assembled Illumina ESTs | 31995 | 31462 | 98.3% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1716 | 1482 |
| transcript | 1544 | 1318 |
| exon | 521 | 327 |
| intron | 90 | 61 |
| description: | ||
| protein length (aa) | 440 | 360 |
| exons per gene | 2.96 | 2 |
| # of gene models | 13359 |
Collaborators
Jon
Magnuson at the Pacific Northwest National Laboratory
Joseph
Spatafora, Oregon State University, USA
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
