Status
The nuclear genome assembly and structural annotation of Reticulomyxa filosa were not determined by the JGI, but were downloaded from NCBI, on May 29, 2018. In order to allow comparative analyses with other genomes sequenced by the Joint Genome Institute, a copy of this genome was incorporated into the JGI Genome Portal, and de novo functional annotations of the proteins were generated by the JGI Annotation Pipeline. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Reticulomyxa filosa v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 101.87 |
| Sequencing read coverage depth | 70x |
| # of contigs | 50809 |
| # of scaffolds | 50809 |
| # of scaffolds >= 2Kbp | 14351 |
| Scaffold N50 | 7416 |
| Scaffold L50 (Mbp) | 0.00 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.05, 0.04, 0.04 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1085 | 868 |
| transcript | 956 | 750 |
| exon | 379 | 281 |
| intron | 87 | 80 |
| description: | ||
| protein length (aa) | 319 | 250 |
| exons per gene | 2.52 | 2 |
| # of gene models | 39963 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Glöckner G, Hülsmann N, Schleicher M, Noegel AA, Eichinger L, Gallinger C, Pawlowski J, Sierra R, Euteneuer U, Pillet L, Moustafa A, Platzer M, Groth M, Szafranski K, Schliwa M
The genome of the foraminiferan Reticulomyxa filosa.
Curr Biol. 2014 Jan 6;24(1):11-18. doi: 10.1016/j.cub.2013.11.027
Glöckner G, Hülsmann N, Schleicher M, Noegel AA, Eichinger L, Gallinger C, Pawlowski J, Sierra R, Euteneuer U, Pillet L, Moustafa A, Platzer M, Groth M, Szafranski K, Schliwa M
The genome of the foraminiferan Reticulomyxa filosa.
Curr Biol. 2014 Jan 6;24(1):11-18. doi: 10.1016/j.cub.2013.11.027
Funding
This project was not sequenced at the JGI.
