Info • Pyrenochaeta sp. DS3sAY3a v1.0

Status

[Dec 2014] The Pyrenochaeta sp. genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Pyrenochaeta sp. DS3sAY3a v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.50
Sequencing read coverage depth 86.7x
# of contigs 209
# of scaffolds 69
# of scaffolds >= 2Kbp 65
Scaffold N50 10
Scaffold L50 (Mbp) 1.27
# of gaps 140
% of scaffold length in gaps 0.5%
Three largest Scaffolds (Mbp) 3.42, 2.71, 2.14


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 29053 28851 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1733 1512
transcript 1601 1394
exon 583 375
intron 78 56
description:
protein length (aa) 456 380
exons per gene 2.75 2
# of gene models 14995


Collaborators

Colleen Hansel at the Woods Hole Oceanographic Institution.
Cara M. Santelli at the Smithsonian Institution, Washington, DC.

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Zeiner CA, Purvine SO, Zink EM, Paša-Tolić L, Chaput DL, Haridas S, Wu S, LaButti K, Grigoriev IV, Henrissat B, Santelli CM, Hansel CM
Comparative Analysis of Secretome Profiles of Manganese(II)-Oxidizing Ascomycete Fungi.
PLoS One. 2016;11(7):e0157844. doi: 10.1371/journal.pone.0157844

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.