Info • Podospora anserina S mat+

Status

The genome sequence and gene prediction of Podospora anserina S mat+ have not been determined by the Joint Genome Institute (JGI), but were obtained from Genoscope. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by Genoscope and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Podospora anserina S mat+ release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.01
Sequencing read coverage depth 10x
# of contigs 182
# of scaffolds 7
# of scaffolds >= 2Kbp 7
Scaffold N50 3
Scaffold L50 (Mbp) 4.73
# of gaps 175
% of scaffold length in gaps 0.7%
Three largest Scaffolds (Mbp) 8.81, 5.17, 4.73


Gene Models ExternalModels
length (bp) of: average median
gene 1624 1359
transcript 1520 1263
exon 655 375
intron 81 64
description:
protein length (aa) 507 421
exons per gene 2.32 2
# of gene models 10588


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Espagne E, Lespinet O, Malagnac F, Da Silva C, Jaillon O, Porcel BM, Couloux A, Aury JM, Ségurens B, Poulain J, Anthouard V, Grossetete S, Khalili H, Coppin E, Déquard-Chablat M, Picard M, Contamine V, Arnaise S, Bourdais A, Berteaux-Lecellier V, Gautheret D, de Vries RP, Battaglia E, Coutinho PM, Danchin EG, Henrissat B, Khoury RE, Sainsard-Chanet A, Boivin A, Pinan-Lucarré B, Sellem CH, Debuchy R, Wincker P, Weissenbach J, Silar P
The genome sequence of the model ascomycete fungus Podospora anserina.
Genome Biol. 2008;9(5):R77. doi: 10.1186/gb-2008-9-5-r77

Funding

This project was not sequenced at the JGI.