Info • Piriformospora indica DSM 11827 from MPI

Status

The genome sequence and gene prediction of Piriformospora indica were not determined by the JGI, but were received from their author Alga Zuccaro at the MPI für terrestrische Mikrobiologie on November 28 2011. Please note that this copy of the genome is not maintained by MPI and is therefore not automatically updated. This copy of the genome does not include the mitochondrial chromosome or genes. The JGI Annotation Pipeline was used to add additional functional annotation to Alga's assembly scaffolds and proteins.

Summary statistics for the Piriformospora indica v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 24.98
Sequencing read coverage depth 22
# of contigs 2398
# of scaffolds 1884
# of scaffolds >= 2Kbp 945
Scaffold N50 133
Scaffold L50 (Mbp) 0.05
# of gaps 257
% of scaffold length in gaps 0.8%
Three largest Scaffolds (Mbp) 0.25, 0.23, 0.22


Gene Models ExternalModels1
length (bp) of: average median
gene 1551 1283
transcript 1313 1074
exon 255 146
intron 59 50
description:
protein length (aa) 438 358
exons per gene 5.16 4
# of gene models 11767


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Zuccaro A, Lahrmann U, Güldener U, Langen G, Pfiffi S, Biedenkopf D, Wong P, Samans B, Grimm C, Basiewicz M, Murat C, Martin F, Kogel KH
Endophytic life strategies decoded by genome and transcriptome analyses of the mutualistic root symbiont Piriformospora indica.
PLoS Pathog. 2011 Oct;7(10):e1002290. doi: 10.1371/journal.ppat.1002290

Funding

This project was not sequenced at the JGI.