Info • Pinnaticoemansia coranantispora CBS 131509 T v1.0

Status

[June 2021] The Pinnaticoemansia coranantispora CBS 131509 T v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 26.85
Sequencing read coverage depth 49.43x
# of contigs 75
# of scaffolds 75
# of scaffolds >= 2Kbp 73
Scaffold N50 8
Scaffold L50 (Mbp) 1.21
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.31, 1.89, 1.82


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 34132 28295 82.9%
Ests est.fasta 81740182 80339679 98.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1823 1514
transcript 1617 1337
exon 949 636
intron 294 175
description:
protein length (aa) 448 349
exons per gene 1.70 1
# of gene models 7973


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Reynolds NK, Stajich JE, Benny GL, Barry K, Mondo S, LaButti K, Lipzen A, Daum C, Grigoriev IV, Ho HM, Crous PW, Spatafora JW, Smith ME
Mycoparasites, gut dwellers, and saprotrophs: Phylogenomic reconstructions and comparative analyses of Kickxellomycotina fungi.
Genome Biol Evol. 2023 Jan 7;():. doi: 10.1093/gbe/evac185

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.