Info • Phlebia radiata Fr. (isolate 79, FBCC0043)

Status

The genome sequence and gene models of Phlebia radiata FBCC0043 were not determined by the Joint Genome Institute (JGI). P. radiata FBCC0043 was sequenced and assembled by the University of Helsinki DNA Sequencing and Genomics laboratory. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by JGI and is therefore not automatically updated.

Summary statistics for the Phlebia radiata FBCC0043 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 40.41
Sequencing read coverage depth
# of contigs 92
# of scaffolds 92
# of scaffolds >= 2Kbp 92
Scaffold N50 8
Scaffold L50 (Mbp) 1.98
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.40, 3.16, 2.97


Gene Models ExternalModels
length (bp) of: average median
gene 1847 1531
transcript 1463 1185
exon 227 128
intron 72 57
description:
protein length (aa) 488 395
exons per gene 6.46 5
# of gene models 14629


Collaborators

  • Mari Mäkinen, Department of Microbiology, University of Helsinki, Finland
  • Taina Lundell, Department of Microbiology, University of Helsinki, Finland

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Kuuskeri J, Häkkinen M, Laine P, Smolander OP, Tamene F, Miettinen S, Nousiainen P, Kemell M, Auvinen P, Lundell T
Time-scale dynamics of proteome and transcriptome of the white-rot fungus Phlebia radiata: growth on spruce wood and decay effect on lignocellulose.
Biotechnol Biofuels. 2016;9(1):192. doi: 10.1186/s13068-016-0608-9

Funding

This project was not sequenced at the JGI.