Info • Phellinus noxius FFPRI411160

Status

The genome sequence and gene models of Phellinus noxius FFPRI411160 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.

Genome Assembly
Genome Assembly size (Mbp) 31.44
Sequencing read coverage depth
# of contigs 15
# of scaffolds 12
# of scaffolds >= 2Kbp 12
Scaffold N50 4
Scaffold L50 (Mbp) 3.41
# of gaps 3
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.53, 4.19, 3.61


Gene Models ExternalModels
length (bp) of: average median
gene 1999 1616
transcript 1504 1197
exon 219 120
intron 87 62
description:
protein length (aa) 501 399
exons per gene 6.85 6
# of gene models 9820


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Chung CL, Lee TJ, Akiba M, Lee HH, Kuo TH, Liu D, Ke HM, Yokoi T, Roa MB, Lu MJ, Chang YY, Ann PJ, Tsai JN, Chen CY, Tzean SS, Ota Y, Hattori T, Sahashi N, Liou RF, Kikuchi T, Tsai IJ
Comparative and population genomic landscape of Phellinus noxius: A hypervariable fungus causing root rot in trees.
Mol Ecol. 2017 Nov;26(22):6301-6316. doi: 10.1111/mec.14359

Links

Funding

This project was not sequenced at the JGI.