Info • Peronospora effusa UA202013

Status

The Peronospora effusa genome sequence and gene models have not been determined by the JGI, but were downloaded from NCBI on March 07, 2024. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds and 5) unsupported short models. This resulted in the removal of 804 models and the generation of the FilteredModels1 (GeneCatalog) gene track. All published models are available in the ExternalModels track. Please note that this copy of the genome is not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.

Genome Assembly
Genome Assembly size (Mbp) 58.58
Sequencing read coverage depth 31.0x
# of contigs 18
# of scaffolds 17
# of scaffolds >= 2Kbp 17
Scaffold N50 6
Scaffold L50 (Mbp) 3.73
# of gaps 1
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 8.42, 6.36, 4.41


Gene Models FilteredModels1
length (bp) of: average median
gene 1677 1237
transcript 1464 1089
exon 608 249
intron 154 79
description:
protein length (aa) 487 362
exons per gene 2.41 2
# of gene models 8867


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.