Status
[May 2021] The Penicillium antarcticum DTO 356-E5 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 30.74 |
| Sequencing read coverage depth | 73.11x |
| # of contigs | 504 |
| # of scaffolds | 470 |
| # of scaffolds >= 2Kbp | 410 |
| Scaffold N50 | 41 |
| Scaffold L50 (Mbp) | 0.20 |
| # of gaps | 34 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.36, 0.90, 0.70 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 40129 | 38132 | 95.0% |
| Ests | est.fasta | 31731175 | 31333933 | 98.7% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1833 | 1610 |
| transcript | 1682 | 1475 |
| exon | 544 | 325 |
| intron | 74 | 58 |
| description: | ||
| protein length (aa) | 468 | 394 |
| exons per gene | 3.09 | 3 |
| # of gene models | 11610 |
Collaborators
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Eurotiomycetes Eurotiales Penicillium
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
