Info • Paecilomyces variotii CBS144490 HYG1 v1.0

Status

[July 2018] Genome sequencing and assembly of Paecilomyces variotii CBS144490 HYG1 was carried out by the Idnurm lab at the University of Melbourne, AU and annotated using the JGI Fungal Annotation Pipeline.

Summary statistics for the Paecilomyces variotii CBS144490 HYG1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.37
Sequencing read coverage depth 1.0x
# of contigs 158
# of scaffolds 126
# of scaffolds >= 2Kbp 107
Scaffold N50 16
Scaffold L50 (Mbp) 0.64
# of gaps 32
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.10, 1.68, 1.48


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 182666438 172358267 94.4%
Ests Illumina_ESTs 51610 34230 66.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1912 1652
transcript 1712 1476
exon 510 295
intron 87 64
description:
protein length (aa) 498 416
exons per gene 3.36 3
# of gene models 9230


Collaborators

Dr. Alexander Idnurm, University of Melbourne, Australia

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Urquhart AS, Mondo SJ, Mäkelä MR, Hane JK, Wiebenga A, He G, Mihaltcheva S, Pangilinan J, Lipzen A, Barry K, de Vries RP, Grigoriev IV, Idnurm A
Genomic and Genetic Insights Into a Cosmopolitan Fungus, Paecilomyces variotii (Eurotiales).
Front Microbiol. 2018;9():3058. doi: 10.3389/fmicb.2018.03058

Funding

This project was not sequenced at the JGI.