Info • Oxytricha trifallax JRB310

Status

The genome sequence and gene models of Oxytricha trifallax were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on May 30, 2018. In order to allow comparative analyses with other genomes sequenced by the JGI, a copy of this genome is incorporated into the JGI Genome Portal. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Summary statistics for the Oxytricha trifallax JRB310 release are below.
Genome Assembly
Genome Assembly size (Mbp) 67.16
Sequencing read coverage depth
# of contigs 22363
# of scaffolds 22363
# of scaffolds >= 2Kbp 13691
Scaffold N50 5700
Scaffold L50 (Mbp) 0.00
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.07, 0.07, 0.07


Gene Models ExternalModels
length (bp) of: average median
gene 2088 1623
transcript 1926 1482
exon 708 334
intron 96 71
description:
protein length (aa) 642 494
exons per gene 2.72 2
# of gene models 24578


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Swart EC, Bracht JR, Magrini V, Minx P, Chen X, Zhou Y, Khurana JS, Goldman AD, Nowacki M, Schotanus K, Jung S, Fulton RS, Ly A, McGrath S, Haub K, Wiggins JL, Storton D, Matese JC, Parsons L, Chang WJ, Bowen MS, Stover NA, Jones TA, Eddy SR, Herrick GA, Doak TG, Wilson RK, Mardis ER, Landweber LF
The Oxytricha trifallax macronuclear genome: a complex eukaryotic genome with 16,000 tiny chromosomes.
PLoS Biol. 2013;11(1):e1001473. doi: 10.1371/journal.pbio.1001473

Funding

This project was not sequenced at the JGI.