Status
The genome sequence and gene models of Ophiocordyceps sinensis IOZ07 were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on June 27, 2020. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 110.88 |
| Sequencing read coverage depth | 80x |
| # of contigs | 23 |
| # of scaffolds | 23 |
| # of scaffolds >= 2Kbp | 22 |
| Scaffold N50 | 3 |
| Scaffold L50 (Mbp) | 18.16 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 23.28, 18.71, 18.16 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1566 | 1299 |
| transcript | 1407 | 1158 |
| exon | 500 | 254 |
| intron | 90 | 65 |
| description: | ||
| protein length (aa) | 469 | 386 |
| exons per gene | 2.81 | 2 |
| # of gene models | 9961 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Shu R, Zhang J, Meng Q, Zhang H, Zhou G, Li M, Wu P, Zhao Y, Chen C, Qin Q
A New High-Quality Draft Genome Assembly of the Chinese Cordyceps Ophiocordyceps sinensis.
Genome Biol Evol. 2020 Jul 1;12(7):1074-1079. doi: 10.1093/gbe/evaa112
Shu R, Zhang J, Meng Q, Zhang H, Zhou G, Li M, Wu P, Zhao Y, Chen C, Qin Q
A New High-Quality Draft Genome Assembly of the Chinese Cordyceps Ophiocordyceps sinensis.
Genome Biol Evol. 2020 Jul 1;12(7):1074-1079. doi: 10.1093/gbe/evaa112
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Hypocreales
Funding
This project was not sequenced at the JGI.
