Status
The genome sequence and gene prediction of Omphalotus olearius were not determined by the JGI, but were recieved from Grayson Wawrzyn ([email protected]) and have been published (pubmed: 22726691). Please note that this copy of the genome is not maintained by the author and is therefore not automatically updated. This copy of the genome does not include the mitochondrial chromosome or genes. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.
Summary statistics for the Omphalotus olearius VT 653.13
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 28.15 |
| Sequencing read coverage depth | 89x |
| # of contigs | 1535 |
| # of scaffolds | 868 |
| # of scaffolds >= 2Kbp | 578 |
| Scaffold N50 | 37 |
| Scaffold L50 (Mbp) | 0.20 |
| # of gaps | 667 |
| % of scaffold length in gaps | 0.4% |
| Three largest Scaffolds (Mbp) | 0.95, 0.76, 0.75 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 2031 | 1583 |
| transcript | 1524 | 1221 |
| exon | 208 | 128 |
| intron | 82 | 58 |
| description: | ||
| protein length (aa) | 508 | 407 |
| exons per gene | 7.32 | 6 |
| # of gene models | 8171 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Wawrzyn GT, Quin MB, Choudhary S, López-Gallego F, Schmidt-Dannert C
Draft genome of Omphalotus olearius provides a predictive framework for sesquiterpenoid natural product biosynthesis in Basidiomycota.
Chem Biol. 2012 Jun 22;19(6):772-83. doi: 10.1016/j.chembiol.2012.05.012
Wawrzyn GT, Quin MB, Choudhary S, López-Gallego F, Schmidt-Dannert C
Draft genome of Omphalotus olearius provides a predictive framework for sesquiterpenoid natural product biosynthesis in Basidiomycota.
Chem Biol. 2012 Jun 22;19(6):772-83. doi: 10.1016/j.chembiol.2012.05.012
Funding
This project was not sequenced at the JGI.
