Status
(Dec 2014) The Niesslia exilis CBS358.70 genome was sequenced using Illumina and assembled using AllPathsLG.
Summary statistics for the Niesslia exilis CBS 358.70 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 35.38 |
| Sequencing read coverage depth | 85 |
| # of contigs | 74 |
| # of scaffolds | 34 |
| # of scaffolds >= 2Kbp | 30 |
| Scaffold N50 | 6 |
| Scaffold L50 (Mbp) | 2.23 |
| # of gaps | 40 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 4.09, 3.31, 3.29 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 35859 | 35610 | 99.3% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1769 | 1513 |
| transcript | 1620 | 1388 |
| exon | 582 | 359 |
| intron | 86 | 59 |
| description: | ||
| protein length (aa) | 466 | 380 |
| exons per gene | 2.79 | 2 |
| # of gene models | 13499 |
Collaborators
Kathryn Bushley, University of Minnesota
Derek Johnson, Oregon State University
Joey Spatafora, Oregon State University
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
