Status
[Jan 2014] The Neurospora crassa FGSC 73 trp-3 genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R42328 (Gnerre et al., 2010).
Summary statistics for the Neurospora crassa FGSC 73 trp-3
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 40.42 |
| Sequencing read coverage depth | 144.8x |
| # of contigs | 757 |
| # of scaffolds | 358 |
| # of scaffolds >= 2Kbp | 316 |
| Scaffold N50 | 56 |
| Scaffold L50 (Mbp) | 0.24 |
| # of gaps | 399 |
| % of scaffold length in gaps | 1.0% |
| Three largest Scaffolds (Mbp) | 1.06, 0.63, 0.52 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | RNNotator assembled Illumina ESTs | 40757 | 38650 | 94.8% |
| Gene Models | FilteredModels3 | |
| length (bp) of: | average | median |
| gene | 2032 | 1796 |
| transcript | 1830 | 1581 |
| exon | 696 | 411 |
| intron | 126 | 78 |
| description: | ||
| protein length (aa) | 438 | 347 |
| exons per gene | 2.63 | 2 |
| # of gene models | 11978 |
Collaborators
Scott E. Baker, Pacific Northwest National Laboratory
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Baker SE, Schackwitz W, Lipzen A, Martin J, Haridas S, LaButti K, Grigoriev IV, Simmons BA, McCluskey K
Draft Genome Sequence of Neurospora crassa Strain FGSC 73.
Genome Announc. 2015 Apr 2;3(2):. doi: 10.1128/genomeA.00074-15
Baker SE, Schackwitz W, Lipzen A, Martin J, Haridas S, LaButti K, Grigoriev IV, Simmons BA, McCluskey K
Draft Genome Sequence of Neurospora crassa Strain FGSC 73.
Genome Announc. 2015 Apr 2;3(2):. doi: 10.1128/genomeA.00074-15
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
