Info • Nemacystus decipiens Onna-1

Status

The Nemacystus decipiens Onna-1 genome assembly and gene models have not been determined by the JGI, but were downloaded from the Okinawa Institute of Science and Technology (OIST) on October 31, 2019. Please note that this copy of the genome is not maintained by OIST and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Summary statistics for the Nemacystus decipiens Onna-1 release are below.
Genome Assembly
Genome Assembly size (Mbp) 153.97
Sequencing read coverage depth
# of contigs 4964
# of scaffolds 685
# of scaffolds >= 2Kbp 685
Scaffold N50 28
Scaffold L50 (Mbp) 1.86
# of gaps 4279
% of scaffold length in gaps 3.7%
Three largest Scaffolds (Mbp) 5.02, 3.87, 3.60


Gene Models ExternalModels
length (bp) of: average median
gene 8368 5799
transcript 2413 1728
exon 228 141
intron 623 428
description:
protein length (aa) 759 528
exons per gene 10.59 8
# of gene models 17099


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Nishitsuji K, Arimoto A, Higa Y, Mekaru M, Kawamitsu M, Satoh N, Shoguchi E
Draft genome of the brown alga, Nemacystus decipiens, Onna-1 strain: Fusion of genes involved in the sulfated fucan biosynthesis pathway.
Sci Rep. 2019 Mar 14;9(1):4607. doi: 10.1038/s41598-019-40955-2

Funding

This project was not sequenced at the JGI.