Status
The Myrmecia bisecta SAG 2043 genome sequence and gene models were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on August 8, 2024. All published models are available as ExternalModels. In order to ensure this genome is comparable to those sequenced and annotated by the JGI, we applied standard filters to ExternalModels to produce the initial GeneCatalog. A total of 2,135 external models were excluded based on one of the following classifications: 1) association with repetitive elements, 2) pseudogenes with internal stop codons, 3) alternative isoforms or overlapping transcript models, and 4) short models lacking functional annotation. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.
Genome Assembly | |
Genome Assembly size (Mbp) | 83.48 |
Sequencing read coverage depth | NA |
# of contigs | 51 |
# of scaffolds | 38 |
# of scaffolds >= 2Kbp | 37 |
Scaffold N50 | 6 |
Scaffold L50 (Mbp) | 4.67 |
# of gaps | 13 |
% of scaffold length in gaps | 0.1% |
Three largest Scaffolds (Mbp) | 13.06, 10.43, 5.58 |
Gene Models | FilteredModels1 | |
length (bp) of: | average | median |
gene | 4786 | 3350 |
transcript | 1432 | 1113 |
exon | 150 | 138 |
intron | 396 | 289 |
description: | ||
protein length (aa) | 477 | 371 |
exons per gene | 9.52 | 8 |
# of gene models | 11697 |
Genome Reference(s)
Puginier C, Libourel C, Otte J, Skaloud P, Haon M, Grisel S, Petersen M, Berrin JG, Delaux PM, Dal Grande F, Keller J
Phylogenomics reveals the evolutionary origins of lichenization in chlorophyte algae.
Nat Commun. 2024 May 24;15(1):4452. doi: 10.1038/s41467-024-48787-z
Links
- JGI EcoGroup Portals: Algae
- JGI PhyloGroup Portals: Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae