Status
Assembly v1 (January 2014) is a standard draft assembly of Illumina gDNA reads. A total of 540 scaffolds and 48.2 Mbp were assembled using AllPathsLG.
Summary statistics for the Morchella importuna CCBAS932
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 48.21 |
| Sequencing read coverage depth | 67.8x |
| # of contigs | 1793 |
| # of scaffolds | 540 |
| # of scaffolds >= 2Kbp | 423 |
| Scaffold N50 | 29 |
| Scaffold L50 (Mbp) | 0.60 |
| # of gaps | 1253 |
| % of scaffold length in gaps | 2.1% |
| Three largest Scaffolds (Mbp) | 1.46, 1.39, 1.36 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 40044 | 39164 | 97.8% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1668 | 1391 |
| transcript | 1427 | 1161 |
| exon | 413 | 257 |
| intron | 100 | 67 |
| description: | ||
| protein length (aa) | 410 | 319 |
| exons per gene | 3.46 | 3 |
| # of gene models | 11600 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Murat C, Payen T, Noel B, Kuo A, Morin E, Chen J, Kohler A, Krizsán K, Balestrini R, Da Silva C, Montanini B, Hainaut M, Levati E, Barry KW, Belfiori B, Cichocki N, Clum A, Dockter RB, Fauchery L, Guy J, Iotti M, Le Tacon F, Lindquist EA, Lipzen A, Malagnac F, Mello A, Molinier V, Miyauchi S, Poulain J, Riccioni C, Rubini A, Sitrit Y, Splivallo R, Traeger S, Wang M, ŽifÄáková L, Wipf D, Zambonelli A, Paolocci F, Nowrousian M, Ottonello S, Baldrian P, Spatafora JW, Henrissat B, Nagy LG, Aury JM, Wincker P, Grigoriev IV, Bonfante P, Martin FM
Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle.
Nat Ecol Evol. 2018 Dec;2(12):1956-1965. doi: 10.1038/s41559-018-0710-4
Murat C, Payen T, Noel B, Kuo A, Morin E, Chen J, Kohler A, Krizsán K, Balestrini R, Da Silva C, Montanini B, Hainaut M, Levati E, Barry KW, Belfiori B, Cichocki N, Clum A, Dockter RB, Fauchery L, Guy J, Iotti M, Le Tacon F, Lindquist EA, Lipzen A, Malagnac F, Mello A, Molinier V, Miyauchi S, Poulain J, Riccioni C, Rubini A, Sitrit Y, Splivallo R, Traeger S, Wang M, ŽifÄáková L, Wipf D, Zambonelli A, Paolocci F, Nowrousian M, Ottonello S, Baldrian P, Spatafora JW, Henrissat B, Nagy LG, Aury JM, Wincker P, Grigoriev IV, Bonfante P, Martin FM
Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle.
Nat Ecol Evol. 2018 Dec;2(12):1956-1965. doi: 10.1038/s41559-018-0710-4
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
