Status
[September 2024] The Mesotaenium kramstae Lemmermann NIES-658 v2.0 genome was sequenced with PacBio, assembled with HiFiAsm, and annotated using the JGI Annotation Pipeline. The mitochondrial and chloroplast genomes were assembled separately and are available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 331.17 |
| Sequencing read coverage depth | 86.14x |
| # of contigs | 802 |
| # of scaffolds | 37 |
| # of scaffolds >= 2Kbp | 37 |
| Scaffold N50 | 13 |
| Scaffold L50 (Mbp) | 10.11 |
| # of gaps | 765 |
| % of scaffold length in gaps | 2.3% |
| Three largest Scaffolds (Mbp) | 24.71, 19.35, 17.51 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 92777 | 78269 | 84.4% |
| Ests | est.fasta | 214853591 | 201428556 | 93.8% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 6340 | 4890 |
| transcript | 1996 | 1786 |
| exon | 329 | 157 |
| intron | 859 | 620 |
| description: | ||
| protein length (aa) | 426 | 335 |
| exons per gene | 6.07 | 5 |
| # of gene models | 14318 |
Collaborators
- Chi Zhang, Center for Plant Science Innovation, University of Nebraska - Lincoln
- Yanbin Yin, Food Science and Technology Department, University of Nebraska - Lincoln
- Xuehuan Feng, Food Science and Technology Department, University of Nebraska - Lincoln
Links
- JGI Algae EcoGroup Portal
- JGI PhyloGroup Portals: Viridiplantae Streptophyta Zygnemophyceae Mesotaenium
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
