Status
[May 2024] The Lipomyces starkeyi NRRL YB-3534 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 20.02 |
| Sequencing read coverage depth | 342.35x |
| # of contigs | 423 |
| # of scaffolds | 404 |
| # of scaffolds >= 2Kbp | 336 |
| Scaffold N50 | 25 |
| Scaffold L50 (Mbp) | 0.20 |
| # of gaps | 19 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.77, 0.73, 0.72 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 27814 | 26387 | 94.9% |
| Ests | est.fasta | 202286721 | 200276178 | 99.0% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1882 | 1680 |
| transcript | 1744 | 1548 |
| exon | 567 | 340 |
| intron | 68 | 57 |
| description: | ||
| protein length (aa) | 441 | 368 |
| exons per gene | 3.08 | 3 |
| # of gene models | 7699 |
Collaborators
- Kyle Pomraning, Pacific Northwest National Laboratory, WA
- Scott Baker, Environmental Molecular Science Laboratory, WA
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales Lipomycetaceae Lipomyces
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
