Info • Limnomonas spitsbergensis CCryo_02-99_CH

Status

The Limnomonas spitsbergensis CCryo_02-99_CH genome assembly and gene models have not been determined by the JGI, but were downloaded from Hulatt et al. 2024 supplemental materials on April 29, 2024. All published models are available as ExternalModels. In order to ensure this genome is comparable to those sequenced annotated by the JGI , we applied standard filters to ExternalModels to produce the initial GeneCatalog. A total of 3,314 external models were excluded based on one of the following classifications: 1) association with repetitive elements, 2) pseudogenes with internal stop codons, 3) alternative isoforms or overlapping transcript models, 4) alleles on secondary scaffolds, and 5) short models lacking functional annotation. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 260.25
Sequencing read coverage depth NA
# of contigs 124
# of scaffolds 124
# of scaffolds >= 2Kbp 124
Scaffold N50 21
Scaffold L50 (Mbp) 3.93
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 10.74, 9.59, 9.52


Gene Models FilteredModels1
length (bp) of: average median
gene 6991 4364
transcript 1846 1578
exon 239 136
intron 769 515
description:
protein length (aa) 524 393
exons per gene 7.71 6
# of gene models 14963


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.