Status
Dec 2013. The Leucogyrophana mollusca KUC20120723A-06 genome was sequenced using the Illumina platform and subsequently assembled with AllPathsLG release version R44008 (Gnerre et al., 2010). The genome was annotated with the JGI Annotation Pipeline and custom analyses.
Summary statistics for the Leucogyrophana mollusca
KUC20120723A-06 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 35.19 |
| Sequencing read coverage depth | 110.2x |
| # of contigs | 1347 |
| # of scaffolds | 1262 |
| # of scaffolds >= 2Kbp | 976 |
| Scaffold N50 | 108 |
| Scaffold L50 (Mbp) | 0.09 |
| # of gaps | 85 |
| % of scaffold length in gaps | 0.2% |
| Three largest Scaffolds (Mbp) | 0.62, 0.54, 0.36 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | EST_contigs | 42908 | 42052 | 98.0% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1694 | 1421 |
| transcript | 1374 | 1136 |
| exon | 233 | 144 |
| intron | 68 | 57 |
| description: | ||
| protein length (aa) | 396 | 314 |
| exons per gene | 5.89 | 4 |
| # of gene models | 14619 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Wu G, Miyauchi S, Morin E, Kuo A, Drula E, Varga T, Kohler A, Feng B, Cao Y, Lipzen A, Daum C, Hundley H, Pangilinan J, Johnson J, Barry K, LaButti K, Ng V, Ahrendt S, Min B, Choi IG, Park H, Plett JM, Magnuson J, Spatafora JW, Nagy LG, Henrissat B, Grigoriev IV, Yang ZL, Xu J, Martin FM
Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales.
New Phytol. 2022 Feb;233(3):1383-1400. doi: 10.1111/nph.17858
Wu G, Miyauchi S, Morin E, Kuo A, Drula E, Varga T, Kohler A, Feng B, Cao Y, Lipzen A, Daum C, Hundley H, Pangilinan J, Johnson J, Barry K, LaButti K, Ng V, Ahrendt S, Min B, Choi IG, Park H, Plett JM, Magnuson J, Spatafora JW, Nagy LG, Henrissat B, Grigoriev IV, Yang ZL, Xu J, Martin FM
Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales.
New Phytol. 2022 Feb;233(3):1383-1400. doi: 10.1111/nph.17858
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
