Status
[October 2024] The Lecanicillium muscarium UNK v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 35.08 |
| Sequencing read coverage depth | 82.58x |
| # of contigs | 94 |
| # of scaffolds | 94 |
| # of scaffolds >= 2Kbp | 94 |
| Scaffold N50 | 8 |
| Scaffold L50 (Mbp) | 1.17 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 3.24, 3.11, 2.70 |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1761 | 1433 |
| transcript | 1568 | 1296 |
| exon | 552 | 294 |
| intron | 107 | 63 |
| description: | ||
| protein length (aa) | 523 | 432 |
| exons per gene | 2.84 | 2 |
| # of gene models | 10917 |
Collaborators
- Rytas Vilgalys, Duke University, NC, USA.
- Francis M. Martin, INRA-Université de Lorraine, France.
Links
- 1000 Fungal Genomes Project
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Hypocreales
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
