Status
[June 2024] The Nectriaceae sp. 302B_T17_2 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 66.95 |
| Sequencing read coverage depth | 106.91x |
| # of contigs | 2259 |
| # of scaffolds | 2210 |
| # of scaffolds >= 2Kbp | 1669 |
| Scaffold N50 | 53 |
| Scaffold L50 (Mbp) | 0.28 |
| # of gaps | 49 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 2.76, 1.76, 1.63 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 73274 | 67928 | 92.7% |
| Ests | est.fasta | 209573426 | 205376070 | 98.0% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1801 | 1548 |
| transcript | 1617 | 1395 |
| exon | 542 | 334 |
| intron | 95 | 61 |
| description: | ||
| protein length (aa) | 470 | 387 |
| exons per gene | 2.98 | 2 |
| # of gene models | 20389 |
Collaborators
- Kathryn Bushley, USDA - Agricultural Research Service.
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Hypocreales Nectriaceae
- JGI EcoGroup Portals: Endophytic Fungi
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
