Status
The genome of Hysterium pulicare was not sequenced by the JGI but by the Oregon State University, within the AFTOL project. For more information, contact Prof. Joey Spatafora ([email protected]). JGI tools were used to automatically annotate predicted proteins.
Summary statistics for the Calosphaeria pulchella genome
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 37.80 |
| Sequencing read coverage depth | 75x |
| # of contigs | 5425 |
| # of scaffolds | 2010 |
| # of scaffolds >= 2Kbp | 1278 |
| Scaffold N50 | 173 |
| Scaffold L50 (Mbp) | 0.06 |
| # of gaps | 3415 |
| % of scaffold length in gaps | 1.7% |
| Three largest Scaffolds (Mbp) | 0.49, 0.25, 0.24 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1795 | 1504 |
| transcript | 1526 | 1284 |
| exon | 484 | 262 |
| intron | 127 | 78 |
| description: | ||
| protein length (aa) | 509 | 428 |
| exons per gene | 3.15 | 3 |
| # of gene models | 10200 |
Collaborators
PI: Joey Spatafora, Oregon State University
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, Barry KW, Condon BJ, Copeland AC, Dhillon B, Glaser F, Hesse CN, Kosti I, LaButti K, Lindquist EA, Lucas S, Salamov AA, Bradshaw RE, Ciuffetti L, Hamelin RC, Kema GH, Lawrence C, Scott JA, Spatafora JW, Turgeon BG, de Wit PJ, Zhong S, Goodwin SB, Grigoriev IV
Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi.
PLoS Pathog. 2012;8(12):e1003037. doi: 10.1371/journal.ppat.1003037
Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, Barry KW, Condon BJ, Copeland AC, Dhillon B, Glaser F, Hesse CN, Kosti I, LaButti K, Lindquist EA, Lucas S, Salamov AA, Bradshaw RE, Ciuffetti L, Hamelin RC, Kema GH, Lawrence C, Scott JA, Spatafora JW, Turgeon BG, de Wit PJ, Zhong S, Goodwin SB, Grigoriev IV
Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi.
PLoS Pathog. 2012;8(12):e1003037. doi: 10.1371/journal.ppat.1003037
Funding
This project was not sequenced at the JGI.
