Info • Hypsizygus marmoreus 51987-8

Status

The genome sequence and gene models of Hypsizygus marmoreus 51987-8 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.

Genome Assembly
Genome Assembly size (Mbp) 41.63
Sequencing read coverage depth
# of contigs 983
# of scaffolds 340
# of scaffolds >= 2Kbp 259
Scaffold N50 20
Scaffold L50 (Mbp) 0.63
# of gaps 643
% of scaffold length in gaps 2.0%
Three largest Scaffolds (Mbp) 2.33, 2.11, 2.00


Gene Models ExternalModels
length (bp) of: average median
gene 1743 1419
transcript 1413 1137
exon 237 130
intron 69 58
description:
protein length (aa) 438 358
exons per gene 5.96 5
# of gene models 15561


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Min B, Kim S, Oh YL, Kong WS, Park H, Cho H, Jang KY, Kim JG, Choi IG
Genomic discovery of the hypsin gene and biosynthetic pathways for terpenoids in Hypsizygus marmoreus.
BMC Genomics. 2018 Nov 1;19(1):789. doi: 10.1186/s12864-018-5159-y

Funding

This project was not sequenced at the JGI.