Status
The genome sequence and gene models of Trichocladium griseum (Humicola grisea var. thermoidae) were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Aug 05, 2021 and annotation provided by the authors. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds, and 5) unsupported short models. This resulted in the removal of 637 models from T. griseum and the generation of the FilteredModels1 gene track. All published models are available in the ExternalModels track. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Genome Assembly | |
Genome Assembly size (Mbp) | 28.75 |
Sequencing read coverage depth | 100x |
# of contigs | 83 |
# of scaffolds | 33 |
# of scaffolds >= 2Kbp | 33 |
Scaffold N50 | 6 |
Scaffold L50 (Mbp) | 1.80 |
# of gaps | 50 |
% of scaffold length in gaps | 0.1% |
Three largest Scaffolds (Mbp) | 3.95, 2.64, 2.57 |
Gene Models | FilteredModels1 | |
length (bp) of: | average | median |
gene | 2277 | 1749 |
transcript | 2079 | 1587 |
exon | 723 | 377 |
intron | 108 | 71 |
description: | ||
protein length (aa) | 549 | 451 |
exons per gene | 2.87 | 2 |
# of gene models | 8099 |
Genome Reference(s)
Steindorff AS, Serra LA, Formighieri EF, de Faria FP, Poças-Fonseca MJ, de Almeida JRM
Insights into the Lignocellulose-Degrading Enzyme System of Humicola grisea var. thermoidea Based on Genome and Transcriptome Analysis.
Microbiol Spectr. 2021 Oct 31;9(2):e0108821. doi: 10.1128/Spectrum.01088-21
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Sordariomycetidae Sordariales
- JGI Thermophilic fungi group