Info • Galdieria sulphuraria MS1

Status

The Galdieria sulphuraria MS1 genome sequence and gene models were not determined by the Joint Genome Insitute, but were downloaded from the Red Algal Resources to Promote Integrative Research in Algal Genomics webpage on October 31, 2019. All published models are available as ExternalModels. In order to ensure this genome is comparable to those sequenced and annotated by the JGI, we applied standard filters to ExternalModels to produce the initial GeneCatalog. A total of 615 external models were excluded based on one of the following classifications: 1) association with repetitive elements, 2) pseudogenes with internal stop codons, 3) alternative isoforms or overlapping transcript models, 4) alleles on secondary scaffolds, and 5) short models lacking functional annotation. Please note that this copy of the genome is not maintained by Rossoni et al. and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.

Genome Assembly
Genome Assembly size (Mbp) 14.91
Sequencing read coverage depth 62.77x
# of contigs 129
# of scaffolds 129
# of scaffolds >= 2Kbp 129
Scaffold N50 32
Scaffold L50 (Mbp) 0.17
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.33, 0.33, 0.32


Gene Models FilteredModels1
length (bp) of: average median
gene 1492 1194
transcript 1305 1059
exon 330 180
intron 62 53
description:
protein length (aa) 435 353
exons per gene 3.96 3
# of gene models 6826


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.