Info • Gracilaria chilensis NLEC103-M9

Status

The Gracilaria chilensis NLEC103-M9 genome sequence and gene models were not determined by the Joint Genome Institute (JGI), but were downloaded from Rhodoexplorer on July 18, 2023. All published models are available as ExternalModels. In order to ensure this genome is comparable to those sequenced and annotated by the JGI, we applied standard filters to ExternalModels to produce the initial GeneCatalog. A total of 825 external models were excluded based on one of the following classifications: 1) association with repetitive elements, 2) pseudogenes with internal stop codons, 3) alternative isoforms or overlapping transcript models, 4) alleles on secondary scaffolds, and 5) short models lacking functional annotation. Please note that this copy of the genome is not maintained by its authors and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.

Genome Assembly
Genome Assembly size (Mbp) 79.77
Sequencing read coverage depth 106.0x
# of contigs 138
# of scaffolds 138
# of scaffolds >= 2Kbp 136
Scaffold N50 18
Scaffold L50 (Mbp) 1.64
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.03, 3.12, 3.00


Gene Models FilteredModels1
length (bp) of: average median
gene 1454 1179
transcript 1392 1137
exon 1031 834
intron 179 100
description:
protein length (aa) 464 379
exons per gene 1.35 1
# of gene models 7217


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.