Status
This genome was sequenced by Li Chen et al in State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, People's Republic of China.
Summary statistics for the Glarea lozoyensis ATCC 20868
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 39.51 |
| Sequencing read coverage depth | 80x |
| # of contigs | 239 |
| # of scaffolds | 22 |
| # of scaffolds >= 2Kbp | 22 |
| Scaffold N50 | 8 |
| Scaffold L50 (Mbp) | 2.11 |
| # of gaps | 217 |
| % of scaffold length in gaps | 0.9% |
| Three largest Scaffolds (Mbp) | 3.59, 3.36, 2.97 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1594 | 1317 |
| transcript | 1442 | 1182 |
| exon | 486 | 276 |
| intron | 79 | 56 |
| description: | ||
| protein length (aa) | 481 | 394 |
| exons per gene | 2.97 | 3 |
| # of gene models | 13083 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Chen L, Yue Q, Zhang X, Xiang M, Wang C, Li S, Che Y, Ortiz-López FJ, Bills GF, Liu X, An Z
Genomics-driven discovery of the pneumocandin biosynthetic gene cluster in the fungus Glarea lozoyensis.
BMC Genomics. 2013 May 20;14():339. doi: 10.1186/1471-2164-14-339
Chen L, Yue Q, Zhang X, Xiang M, Wang C, Li S, Che Y, Ortiz-López FJ, Bills GF, Liu X, An Z
Genomics-driven discovery of the pneumocandin biosynthetic gene cluster in the fungus Glarea lozoyensis.
BMC Genomics. 2013 May 20;14():339. doi: 10.1186/1471-2164-14-339
Funding
This project was not sequenced at the JGI.
