Status
[May 2020] The genome of Fusarium oxysporum NRRL 26365 was provided to JGI by Li-Jun Ma. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. The JGI Fungal Annotation Pipeline was used to predict gene models and provide functional annotation.
Summary statistics for the Fusarium oxysporum NRRL 26365
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 48.46 |
| Sequencing read coverage depth | |
| # of contigs | 280 |
| # of scaffolds | 280 |
| # of scaffolds >= 2Kbp | 247 |
| Scaffold N50 | 21 |
| Scaffold L50 (Mbp) | 0.70 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 2.76, 1.79, 1.77 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 47130 | 39748 | 84.3% |
| Ests | est.fasta | 190612210 | 180557069 | 94.7% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1768 | 1524 |
| transcript | 1601 | 1386 |
| exon | 518 | 309 |
| intron | 82 | 56 |
| description: | ||
| protein length (aa) | 480 | 404 |
| exons per gene | 3.09 | 3 |
| # of gene models | 16047 |
Collaborators
- Li-Jun Ma, University of Massachusetts Amherst, USA
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreales Nectriaceae Fusarium
Funding
This project was not sequenced at the JGI.
