Info • Fonsecaea erecta CBS 125763

Status

The genome sequence and gene models of Fonsecaea erecta CBS 125763 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.

Genome Assembly
Genome Assembly size (Mbp) 34.75
Sequencing read coverage depth
# of contigs 94
# of scaffolds 57
# of scaffolds >= 2Kbp 57
Scaffold N50 5
Scaffold L50 (Mbp) 2.68
# of gaps 37
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 4.89, 4.19, 4.10


Gene Models ExternalModels
length (bp) of: average median
gene 1613 1395
transcript 1479 1281
exon 602 323
intron 94 62
description:
protein length (aa) 493 427
exons per gene 2.46 2
# of gene models 12090


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Vicente VA, Weiss VA, Bombassaro A, Moreno LF, Costa FF, Raittz RT, Leão AC, Gomes RR, Bocca AL, Fornari G, de Castro RJA, Sun J, Faoro H, Tadra-Sfeir MZ, Baura V, Balsanelli E, Almeida SR, Dos Santos SS, Teixeira MM, Soares Felipe MS, do Nascimento MMF, Pedrosa FO, Steffens MB, Attili-Angelis D, Najafzadeh MJ, Queiroz-Telles F, Souza EM, De Hoog S
Comparative Genomics of Sibling Species of Fonsecaea Associated with Human Chromoblastomycosis.
Front Microbiol. 2017;8():1924. doi: 10.3389/fmicb.2017.01924

Funding

This project was not sequenced at the JGI.