Status
The Fistulina hepatica genome was sequenced using the Illumina platform and assembledwith AllPathsLG. The genome was annotated with the JGI annotation pipeline and custom analyses. No ESTs were available so none were used in the annotation.
Summary statistics for the Fistulina hepatica v1.0 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 33.85 |
| Sequencing read coverage depth | 137.9 |
| # of contigs | 914 |
| # of scaffolds | 588 |
| # of scaffolds >= 2Kbp | 414 |
| Scaffold N50 | 27 |
| Scaffold L50 (Mbp) | 0.35 |
| # of gaps | 326 |
| % of scaffold length in gaps | 1.0% |
| Three largest Scaffolds (Mbp) | 1.55, 1.28, 1.23 |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1601 | 1316 |
| transcript | 1231 | 1008 |
| exon | 215 | 135 |
| intron | 80 | 58 |
| description: | ||
| protein length (aa) | 410 | 336 |
| exons per gene | 5.72 | 4 |
| # of gene models | 11244 |
Collaborators
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Floudas D, Held BW, Riley R, Nagy LG, Koehler G, Ransdell AS, Younus H, Chow J, Chiniquy J, Lipzen A, Tritt A, Sun H, Haridas S, LaButti K, Ohm RA, Kües U, Blanchette RA, Grigoriev IV, Minto RE, Hibbett DS
Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii.
Fungal Genet Biol. 2015 Mar;76():78-92. doi: 10.1016/j.fgb.2015.02.002
Floudas D, Held BW, Riley R, Nagy LG, Koehler G, Ransdell AS, Younus H, Chow J, Chiniquy J, Lipzen A, Tritt A, Sun H, Haridas S, LaButti K, Ohm RA, Kües U, Blanchette RA, Grigoriev IV, Minto RE, Hibbett DS
Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii.
Fungal Genet Biol. 2015 Mar;76():78-92. doi: 10.1016/j.fgb.2015.02.002
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
