Status
This genome was sequenced by Donna E. Akiyoshi et al. in Division of Infectious Diseases, Department of Biomedical Sciences, Tufts Cummings School of Veterinary Medicine, North Grafton, Massachusetts, United States of America (Genomic survey of the non-cultivatable opportunistic human pathogen, Enterocytozoon bieneusi). Please check their data use policies.
The genome was assembled from a combination of Illumina/Solexa and 454 reads. Gene models were predicted de novo based on homology and evidence from the RNA-seq data.
Summary statistics for the Enterocytozoon bieneusi H348
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 3.86 |
| Sequencing read coverage depth | 4x |
| # of contigs | 1743 |
| # of scaffolds | 1733 |
| # of scaffolds >= 2Kbp | 129 |
| Scaffold N50 | 136 |
| Scaffold L50 (Mbp) | 0.00 |
| # of gaps | 10 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.20, 0.13, 0.13 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 719 | 585 |
| transcript | 719 | 585 |
| exon | 719 | 585 |
| intron | n/a | 0 |
| description: | ||
| protein length (aa) | 240 | 195 |
| exons per gene | 1.00 | 1 |
| # of gene models | 3632 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Akiyoshi DE, Morrison HG, Lei S, Feng X, Zhang Q, Corradi N, Mayanja H, Tumwine JK, Keeling PJ, Weiss LM, Tzipori S
Genomic survey of the non-cultivatable opportunistic human pathogen, Enterocytozoon bieneusi.
PLoS Pathog. 2009 Jan;5(1):e1000261. doi: 10.1371/journal.ppat.1000261
Akiyoshi DE, Morrison HG, Lei S, Feng X, Zhang Q, Corradi N, Mayanja H, Tumwine JK, Keeling PJ, Weiss LM, Tzipori S
Genomic survey of the non-cultivatable opportunistic human pathogen, Enterocytozoon bieneusi.
PLoS Pathog. 2009 Jan;5(1):e1000261. doi: 10.1371/journal.ppat.1000261
Funding
This project was not sequenced at the JGI.
