Info • Dioszegia hungarica PDD-24b-2

Status

The genome of Dioszegia hungarica PDD-24b-2 was sequenced with PacBio (median subreads 3,584 bp; 474 621 subreads) and assembled with Flye v2.8.2. Assembly was corrected with Illumina MiSeq reads (19,803,936 paired-end reads) using BOWTIE2 v2.4.1 and Pilon v1.23. The genome was annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 20.96
Sequencing read coverage depth 101x
# of contigs 17
# of scaffolds 17
# of scaffolds >= 2Kbp 17
Scaffold N50 4
Scaffold L50 (Mbp) 2.17
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.56, 2.39, 2.31


Gene Models FilteredModels1
length (bp) of: average median
gene 1875 1572
transcript 1538 1260
exon 247 149
intron 67 52
description:
protein length (aa) 513 420
exons per gene 6.23 5
# of gene models 8219


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Jarrige D, Haridas S, Bleykasten-Grosshans C, Joly M, Nadalig T, Sancelme M, Vuilleumier S, Grigoriev IV, Amato P, Bringel F
High quality genome of the basidiomycete yeast Dioszegia hungarica PDD-24b-2 isolated from cloud water.
G3 (Bethesda). 2022 Oct 19;():. doi: 10.1093/g3journal/jkac282

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.