Status
[December 2022] The Dichomitus squalens CBS 464.89 v2.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with PacBio and analysed with IsoSeq. The mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 45.60 |
| Sequencing read coverage depth | 77.4x |
| # of contigs | 61 |
| # of scaffolds | 60 |
| # of scaffolds >= 2Kbp | 60 |
| Scaffold N50 | 6 |
| Scaffold L50 (Mbp) | 3.51 |
| # of gaps | 1 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 4.99, 3.89, 3.67 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | est.fasta | 35831114 | 35602671 | 99.4% |
| Other | IsoSeq_hq_reads | 109890 | 109292 | 99.5% |
| Other | Trinity_assembled_Illumina_transcriptome | 51408 | 50329 | 97.9% |
| Gene Models | FilteredModels2 | |
| length (bp) of: | average | median |
| gene | 1951 | 1709 |
| transcript | 1576 | 1350 |
| exon | 266 | 162 |
| intron | 78 | 60 |
| description: | ||
| protein length (aa) | 441 | 360 |
| exons per gene | 5.93 | 5 |
| # of gene models | 13877 |
Collaborators
- Ronald P. de Vries, Westerdijk Fungal Biodiversity Institute, UT, The Netherlands
- Miia Mäkelä, University of Helsinki, Finland
- Michael Freitag, Oregon State University, OR, USA
Links
- JGI PhyloGroup Portals: Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Polyporales
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
