Info • Dichomitus squalens OM18370.1 v1.0

Status

The Dichomitus squalens OM18370.1 genome was sequenced using Illumina technology and assembled with AllPathsLG.

Summary statistics for the Dichomitus squalens OM18370.1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.32
Sequencing read coverage depth 100.8x
# of contigs 1126
# of scaffolds 439
# of scaffolds >= 2Kbp 366
Scaffold N50 39
Scaffold L50 (Mbp) 0.27
# of gaps 687
% of scaffold length in gaps 2.6%
Three largest Scaffolds (Mbp) 1.56, 1.30, 1.07


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 43685 40861 93.5%
Ests est.fasta 93952362 88095361 93.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1694 1449
transcript 1365 1150
exon 256 157
intron 78 61
description:
protein length (aa) 388 319
exons per gene 5.34 4
# of gene models 14950


Collaborators

Ronald P. de Vries, CBS-KNAW Fungal Biodiversity Centre

Miia Mäkelä and Kristiina Hildén from University of Helsinki

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Casado López S, Peng M, Daly P, Andreopoulos B, Pangilinan J, Lipzen A, Riley R, Ahrendt S, Ng V, Barry K, Daum C, Grigoriev IV, Hildén KS, Mäkelä MR, de Vries RP
Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus Dichomitus squalens.
Microbiol Resour Announc. 2019 May 2;8(18):. doi: 10.1128/MRA.00264-19

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.