Info • Cylindrotheca closterium

Status

The Cylindrotheca closterium genome sequence and gene models have not been determined by the JGI, but were downloaded from Universiteit Gent on November 13, 2024. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds and 5) unsupported short models. This resulted in the removal of 4254 models and the generation of the FilteredModels1 (GeneCatalog) gene track. All published models are available in the ExternalModels track. Please note that this copy of the genome is not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.

Genome Assembly
Genome Assembly size (Mbp) 55.07
Sequencing read coverage depth NA
# of contigs 2846
# of scaffolds 2534
# of scaffolds >= 2Kbp 1828
Scaffold N50 53
Scaffold L50 (Mbp) 0.24
# of gaps 312
% of scaffold length in gaps 0.5%
Three largest Scaffolds (Mbp) 1.73, 1.29, 1.12


Gene Models FilteredModels1
length (bp) of: average median
gene 1530 1249
transcript 1454 1182
exon 833 624
intron 104 87
description:
protein length (aa) 485 394
exons per gene 1.75 1
# of gene models 20379


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.